PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14093.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 810aa    MW: 90318.8 Da    PI: 7.3343
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14093.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.13.6e-21718798186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ev++Li++r e+++r++  k +++lWee+s+++ + g++rsp qCk+ w +l ++y+++k+ +k++     +++pyf+++e
  KHN14093.1 718 KWKHEEVKKLIDMRGELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEEVKNEKKNK-----KKWPYFEDME 798
                 7****************************************************************999984.....68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.105.9E-6920270IPR001279Metallo-beta-lactamase
SuperFamilySSF562812.09E-7121435IPR001279Metallo-beta-lactamase
SMARTSM008497.1E-2533230IPR001279Metallo-beta-lactamase
PfamPF127067.5E-1145180IPR001279Metallo-beta-lactamase
PfamPF075217.6E-6378407IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.618711775IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-5712777IPR009057Homeodomain-like
PfamPF138376.1E-19716800No hitNo description
CDDcd122033.34E-20717778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MEDSVQCKME EFYEGQDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GIMFPDYDEL  60
GVQKIIPDTT FIRKWKHKIE AVIITHGHED HIGALPWVIP ALDSHTPIFA SSFTMELIRK  120
RLKDHGIFVP SRLKVFRTRK KFMAGPFEVE PITVTHSIPD CCGLVLRCSD GTILHTGDWK  180
IDETPLDGKV FDREALEELS KEGVTLMMSD STNVLSPGRT TSESVVADAL LRNISAAKGR  240
VITTQFASNI HRLGSVKAAA DLTGRKLVFV GMSLRTYLDA AWKDGKSPID PSTLVKAEDI  300
DAYAPKDLLI VTTGSQAEPR AALNLASFGS SHSFKLTKED TVLYSAKVIP GNESRVMEML  360
NRISEIGSTI VMGKNECLHT SGHGYRGELE EVLRIVKPQH FLPIHGELLF LKEHELLGKS  420
TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF ISLGKENLQL MYSDGEKAFG TSSDLFIDER  480
LKIALDGIIV VNMEIFRPQN LDSPVENTLK GKIRITTRCL WLDKGKLLDA LHKAAHAALA  540
SCPVSCPLAH MEKIVSEMLR KMVRKYSGKR PEVIAIAIEN PAAVLANEIN TKLSGKLNVD  600
GMSALRKVVD GHEKENQRTE MQIRDRIDVG GLLPTKDNAI SSGAEDGLSD AEDPNDYFKP  660
FVESSPVEKS IKTNNGYVPR KEKSSPLKDD CSEDTEECNS VNTSDSEPKS SKSAKRNKWK  720
HEEVKKLIDM RGELNDRFQV VKGRMALWEE ISQNLLANGI SRSPGQCKSL WTSLLQKYEE  780
VKNEKKNKKK WPYFEDMERI LADNKTLETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-872157919560RIBONUCLEASE J
5a0t_B2e-872157919560RIBONUCLEASE J
5a0v_A2e-872157919560RIBONUCLEASE J
5a0v_B2e-872157919560RIBONUCLEASE J
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600801.10.0PREDICTED: ribonuclease J-like isoform X2
TrEMBLA0A0B2Q2900.0A0A0B2Q290_GLYSO; Ribonuclease J
STRINGGLYMA17G13780.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]